Package index • RecruitNetP

All functions

Amoladeras_cover: Amoladeras cover data
Amoladeras_int: Amoladeras interaction data
RN_dims(): Basic network dimensions
RN_heatmap(): Visualize a heatmap of the interactions matrix.
RN_to_matrix(): Convert field data to matrix format
accum_curve(): Accumulation curve of network dimensions
associndex(): Calculate different association indices considering different interaction types.
canopy_service_test(): Identifies whether a species acts as depressing, enhancing or neutral
check_cover(): Check cover data format
check_interactions(): Check interaction data format
comm_subset(): Subset data from one study site
comm_to_RN(): Combine cover data with interaction data.
download_RN(): Download RecruitNet database from Zenodo
funtopol_rec(): Species functional role in the general recruitment network
int_significance(): Statistical significance of interactions
link_completeness(): Estimates the completeness and coverage of the sampled interactions
load_cover(): Load canopy cover data from RecruitNet database
load_interactions(): Load interaction data from RecruitNet database
node_degrees(): Calculate width of canopy service and recruitment niches
node_topol(): calculates eigenvector centrality and the two measures of extended niche.
recruitment_niche_test(): Recruitment niche: community-level effects on species recruitment
remove_no_cover(): Remove species with no cover data
test_data: Test data
topol_depre(): Summary and node-based information of species in loops and simple paths
topol_fac(): summary and node-based information of species in loops and simple paths
visu_funtopol_rec(): visualize the functional topology of general recruitment networks
visu_net(): Graph of nodes and interactions
visu_topol_depre(): Allow the visualization of intransitivity loops of recruitment depression
visu_topol_fac(): Allow the visualization of reciprocal facilitation