Observed and estimated number of links, and link completeness. Methods based in Chao et al. (2014) as implemented in R package iNEXT.
link_completeness(
dataset = NULL,
site = NULL,
type = c("incidence", "abundance")
)The name of the data set where recruitment networks are stored. Usually, it will be "RecruitNet" (or the name assigned to the data set when it was imported). At least, the data set must contain columns named "Study_site", "Plot", "Canopy", "Recruit" and "Frequency". In data sets containing a single site or a single plot, the corresponding columns must be included anyway.
The name of a study site.
Can take two values: "incidence" or "abundance". Estimates based on incidence data are recommended, but can only be obtained if your data set is structured in multiple plots. Alternatively, for data collected in a single plot, estimates can be based only on abundance data.
A data frame TODO
if (FALSE) { # interactive()
link_completeness(RecruitNet, "Ventisquero", "incidence")
link_completeness(RecruitNet, "Laxe", "abundance")
link_completeness(RecruitNet, "Laxe", "incidence") # Issues a warning
link_completeness(RecruitNet, "LosReyes", "abundance")
link_completeness(RecruitNet, "LosReyes", "incidence") #Issues an error
}